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1

Towards kinetic modeling of genome-scale metabolic networks without sacrificing stoichiometric, thermodynamic and physiological constraints

Chakrabarti, Anirikh, Miskovic, Ljubisa, Soh, Keng Cher, Hatzimanikatis, Vassily

Journal:

Biotechnology Journal

Year:

2013

Language:

english

File:

PDF, 1.87 MB

english, 2013

2

Kinetic models of metabolism that consider alternative steady-state solutions of intracellular fluxes and concentrations

Hameri, Tuure, Fengos, Georgios, Ataman, Meric, Miskovic, Ljubisa, Hatzimanikatis, Vassily

Journal:

Metabolic Engineering

Year:

2019

Language:

english

File:

PDF, 2.53 MB

english, 2019

3

Discovery and Evaluation of Biosynthetic Pathways for the Production of Five Methyl Ethyl Ketone Precursors

Tokić, Milenko, Hadadi, Noushin, Ataman, Meric, Neves, Dario, Ebert, Birgitta E., Blank, Lars M., Miskovic, Ljubisa, Hatzimanikatis, Vassily

Journal:

ACS Synthetic Biology

Year:

2018

Language:

english

File:

PDF, 9.42 MB

english, 2018

4

Antihypertensive Drugs Metabolism: An Update to Pharmacokinetic Profiles and Computational Approaches

Zisaki, Aikaterini, Miskovic, Ljubisa, Hatzimanikatis, Vassily

Journal:

Current Pharmaceutical Design

Year:

2014

Language:

english

File:

PDF, 262 KB

english, 2014

5

iSCHRUNK – In Silico Approach to Characterization and Reduction of Uncertainty in the Kinetic Models of Genome-scale Metabolic Networks

Andreozzi, Stefano, Miskovic, Ljubisa, Hatzimanikatis, Vassily

Journal:

Metabolic Engineering

Year:

2016

Language:

english

File:

PDF, 1.18 MB

english, 2016

6

A design–build–test cycle using modeling and experiments reveals interdependencies between upper glycolysis and xylose uptake in recombinantS. cerevisiaeand improves predictive capabilities of large-scale kinetic models

Ljubisa Miskovic,Susanne Alff-Tuomala,Keng Cher Soh…

Journal:

Biotechnology for Biofuels

Year:

2017

Language:

english

File:

PDF, 2.64 MB

english, 2017

7

Iterative minimization of control performance criteria

Alexandre S. Bazanella, Michel Gevers, Ljubiša Mišković, Brian D.O. Anderson

Journal:

Year:

2008

Language:

english

File:

PDF, 1.91 MB

english, 2008

8

From network models to network responses: integration of thermodynamic and kinetic properties of yeast genome-scale metabolic networks

Keng Cher Soh, Ljubisa Miskovic, Vassily Hatzimanikatis

Journal:

FEMS Yeast Research

Year:

2012

Language:

english

File:

PDF, 949 KB

english, 2012

9

Iterative controller tuning by minimization of a generalized decorrelation criterion 1

Mišković, Ljubiša, Karimi, Alireza, Bonvin, Dominique

Journal:

IFAC Proceedings Volumes

Year:

2003

File:

PDF, 563 KB

2003

10

Rites of passage: requirements and standards for building kinetic models of metabolic phenotypes

Miskovic, Ljubisa, Tokic, Milenko, Fengos, Georgios, Hatzimanikatis, Vassily

Journal:

Current Opinion in Biotechnology

Year:

2015

Language:

english

File:

PDF, 722 KB

english, 2015

11

Closed-Loop Identification of MIMO Systems: A New Look at Identifiability and Experiment Design

Bazanella, Alexandre Sanfelice, Gevers, Michel, Miškovic, Ljubiša

Journal:

European Journal of Control

Year:

2010

Language:

english

File:

PDF, 165 KB

english, 2010

12

Control Theory Concepts for Modeling Uncertainty in Enzyme Kinetics of Biochemical Networks

Miskovic, Ljubisa, Tokic, Milenko, Savoglidis, Georgios, Hatzimanikatis, Vassily

Journal:

Industrial & Engineering Chemistry Research

Year:

2019

Language:

english

File:

PDF, 640 KB

english, 2019

13

Large-scale kinetic metabolic models of Pseudomonas putida KT2440 for consistent design of metabolic engineering strategies

Tokic, Milenko, Hatzimanikatis, Vassily, Miskovic, Ljubisa

Journal:

Biotechnology for Biofuels

Year:

2020

File:

PDF, 2.43 MB

2020

14

Production of biofuels and biochemicals: in need of an ORACLE

Ljubisa Miskovic, Vassily Hatzimanikatis

Journal:

Trends in Biotechnology

Year:

2010

Language:

english

File:

PDF, 279 KB

english, 2010

15

[IEEE European Control Conference 2007 (ECC) - Kos (2007.7.2-2007.7.5)] 2007 European Control Conference (ECC) - Closed-loop identification of MIMO systems: a new look at identifiability and experiment design

Bazanella, Alexandre Sanfelice, Gevers, Michel, Miskovic, Ljubisa

Year:

2007

Language:

english

File:

PDF, 532 KB

english, 2007

16

Modeling of uncertainties in biochemical reactions

Ljubiša Mišković, Vassily Hatzimanikatis

Journal:

Biotechnology and Bioengineering

Year:

2011

Language:

english

File:

PDF, 1.63 MB

english, 2011

17

Identification of metabolic engineering targets for the enhancement of 1,4-butanediol production in recombinant E. coli using large-scale kinetic models

Andreozzi, Stefano, Chakrabarti, Anirikh, Soh, Keng Cher, Burgard, Anthony, Yang, Tae Hoon, Van Dien, Stephen, Miskovic, Ljubisa, Hatzimanikatis, Vassily

Journal:

Metabolic Engineering

Year:

2016

Language:

english

File:

PDF, 4.34 MB

english, 2016

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